FastQCFastQC Report
Wed 8 May 2024
EGAF00007963367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514463
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA29420.5718584232490966No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24750.481084159599427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24490.4760303462056552No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19010.3695115100600043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14760.2869010988156583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12340.23986175876593652No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11730.22800473503439508No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11020.21420393692063375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10490.20390193269486825No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10300.2002087613686504No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCC10180.19787623210998653No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9760.18971237970466293No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9110.1770778462202335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8730.16969150356779789No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7910.15375255363359464No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7870.15297504388070668No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7820.1520031566895967No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7820.1520031566895967No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7280.14150677502560924No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7090.1378136036993914No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7020.13645296163183748No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6970.13548107444072752No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6950.13509231956428355No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6920.13450918724961758No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6840.13295416774384164No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6810.13237103542917567No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6280.12206903120341017No Hit
GCACAGACCCCGGATCAGGCCTCTCTGCACG5880.11429393367453054No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5840.11351642392164257No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5750.11176702697764465No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5450.10593570383098494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5170.10049313556076919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)