FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007963368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534296
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT30100.5633581385598994No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14990.2805560962462755No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14790.27681285280069473No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12280.22983514755865664No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11620.21748244418824023No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10880.20363244343959155No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10870.20344528126731248No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACTGCT10070.18847230748498958No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9760.18267028014433948No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9680.1811729827661072No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9500.17780406366508453No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7930.1484196026172758No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7790.1457993322053693No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7540.1411202778983934No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7370.13793852096964979No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7320.1370027101082546No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7140.13363379100723194No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6790.12708311497746566No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6710.12558581759923337No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6610.12371419587644303No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6450.12071960111997844No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6420.12015811460314132No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6410.1199709524308623No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6400.11978379025858327No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6090.11398176291793312No Hit
GGAATGCTGTGCGGACGGACCGGTGACAGCGCGATCGCTGCGAG5990.11211014119514276No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5830.10911554643867817No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5500.10293919475346999No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5440.10181622171979578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)