FastQCFastQC Report
Wed 8 May 2024
EGAF00007963369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534296
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA30920.5787054366867803No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26190.4901777291987962No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19180.3589770464311917No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15140.283363528830461No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12600.23582433707158582No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12400.23208109362600507No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11360.21261622770898528No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCC10530.19708176740982525No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10380.19427433482563972No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10270.1922155509305703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10270.1922155509305703No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9590.17948852321559586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8510.15927500860945992No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8450.15815203557578572No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8070.15103987302918234No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7780.14561217003309027No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7760.1452378456885322No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7700.14411487265485798No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7500.14037162920927723No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7490.14018446703699822No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7470.13981014269244016No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7130.1334466288349529No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7110.13307230449039484No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6820.1276446014943028No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6640.12427568239328013No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.11809933070807194No Hit
GCACAGACCCCGGATCAGGCCTCTCTGCACG6210.11622770898528156No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6170.11547906029616543No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6150.11510473595160735No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6000.11229730336742182No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5630.10537230299309747No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5590.10462365430398131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)