FastQCFastQC Report
Wed 8 May 2024
EGAF00007963370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516862
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28450.5504370605693589No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14290.2764761193510067No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13900.26893058495304356No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11730.226946457661813No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11720.22675298242083958No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11270.21804659657703604No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10760.20817935928739198No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACTGCT9910.1917339638046519No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9490.1836080036837686No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9430.18244715223792812No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9190.1778037464545662No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7860.15207153940510232No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7370.1425912525974051No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7360.1423977773564317No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7320.14162387639253804No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7180.13891522301891027No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7070.13678699536820274No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6960.1346587677174952No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6590.12750018380147893No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6570.12711323331953212No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6560.12691975807855868No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6440.12459805518687773No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6090.11782642175280829No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT5770.11163521404165908No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5740.11105478831873886No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5390.10428315488466941No Hit
GGAATGCTGTGCGGACGGACCGGTGACAGCGCGATCGCTGCGAG5290.10234840247493528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)