FastQCFastQC Report
Wed 8 May 2024
EGAF00007963371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516862
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA29730.5752018914139557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25720.4976183197836173No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25340.49026626062662765No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18710.36199217586125504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14090.2726066145315384No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12660.2449396550723404No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12010.23236376440906856No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10760.20817935928739198No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCC10710.20721198308252492No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10680.2066315573596047No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10670.20643808211863127No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10030.19405566669633287No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9300.17993197410527376No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8760.16948431109270948No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8440.16329310338156028No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8190.15845622235722495No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7710.14916941079050114No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7650.14800855934466067No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7620.14742813362174043No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7440.143945579284219No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7230.13988259922377733No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7170.13872174777793686No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6820.13195011434386741No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6630.12827408476537258No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6580.1273067085605055No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6560.12691975807855868No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6290.12169592657227656No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6120.11840684747572852No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5720.11066783783679202No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5650.10931351114997813No Hit
GCACAGACCCCGGATCAGGCCTCTCTGCACG5410.10467010536661624No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5260.10176797675201504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5190.10041365006520114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)