FastQCFastQC Report
Wed 8 May 2024
EGAF00007963373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516190
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27210.5271314825936186No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23230.45002809043181774No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC18500.35839516457118503No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15690.3039578449795618No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15080.2921404909045119No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG14470.280323136829462No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14310.27722350297371123No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12480.24177144074856155No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12320.23867180689281078No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11520.22317363761405687No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10710.20748174121931845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9930.19237102617253335No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9880.19140239059261124No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9480.18365330595323429No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8020.15536914701950832No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7950.15401305720761735No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7240.14025843197272322No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6670.12921598636161105No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6610.1280536236657045No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6490.1257288982738914No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6490.1257288982738914No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6130.11875472209845211No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6070.11759235940254557No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6070.11759235940254557No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5920.11468645266277921No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5710.1106181832271063No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5610.10868091206726205No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5290.10248164435576047No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5180.10035064607993181No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5180.10035064607993181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)