FastQCFastQC Report
Wed 8 May 2024
EGAF00007963375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496865
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26670.5367655198092037No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24710.4973181850200759No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21050.42365632515874535No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC18550.37334084711138843No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14160.2849868676602296No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13790.27754017690922084No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13790.27754017690922084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13680.27532629587513713No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11470.23084741328127356No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11450.23044488945689473No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11390.22923731798375818No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10400.2093123886770048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9890.199048031155344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9400.18918619745806206No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9270.1865697925995995No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7810.15718555341994303No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7240.14571362442514565No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7140.1437010053032514No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6570.132229076308454No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6560.1320278143962646No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6330.12739879041590774No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6210.12498364746963461No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5970.12015336157708834No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5930.11934831392833065No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5840.1175369567186258No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5540.11149909935294294No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5530.11129783744075353No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5450.10968774214323809No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5300.1066688134603967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)