FastQCFastQC Report
Wed 8 May 2024
EGAF00007963377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518121
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27970.5398352894401115No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23370.4510529393713052No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC19430.3750089264862841No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14910.2877706172882396No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG14100.2721372034717759No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13950.26924212683909743No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13450.25959187139683587No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12370.2387473196415509No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11790.22755302332852753No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11430.22060483941009917No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11220.21655173212434933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10330.19937427743712374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10210.19705821613098098No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9570.1847058891648862No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8040.15517610751156583No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7640.14745590315775658No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7460.14398181119854242No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7270.14031471413048302No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6970.1345245608651261No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6840.1320154944501381No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6710.1295064280351501No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6080.11734710617790052No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6000.11580306530713869No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5790.11174995802138883No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5780.1115569529125436No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5630.10866187627986512No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5570.10750384562679374No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5390.10402975366757958No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5380.10383674855873434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)