FastQCFastQC Report
Wed 8 May 2024
EGAF00007963379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501285
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26650.5316337013874343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25460.507894710593774No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21470.4282992708738542No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC18650.37204384731240714No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15250.30421815933052054No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13690.27309813778589026No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13450.2683104421636395No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13110.2615278733654508No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11670.23280169963194589No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11550.2304078518208205No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11550.2304078518208205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10920.2178401508124121No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9950.19848988100581505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9070.18093499705756205No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9020.17993756046959317No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7560.15081241210090068No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7050.1406385589036177No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6890.13744676182211715No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6700.13365650278783528No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6580.13126265497670986No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6120.1220862383673958No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6050.1206898271442393No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6050.1206898271442393No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5940.11849546665070768No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5790.11550315688680093No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5770.11510418225161335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5520.11011699931176876No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5200.10373340514876768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)