FastQCFastQC Report
Wed 8 May 2024
EGAF00007963389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483420
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32620.6747755574862438No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12910.26705556245087086No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG10360.2143064002316826No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7710.1594886434156634No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6090.1259774109470026No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5830.12059906499524223No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5830.12059906499524223No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5660.11708245418062968No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5640.1166687352612635No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5390.11149724876918622No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5380.11129038930950312No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5180.1071532001158413No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5060.1046708865996442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)