FastQCFastQC Report
Wed 8 May 2024
EGAF00007963391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467099
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30830.6600313852095595No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23090.4943277549298971No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12080.25861755216774174No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG10900.23335524160831003No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7730.16548954290204004No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.12224389262233488No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5520.11817623244751113No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5440.1164635334265327No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5380.1151790091607989No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5090.10897047520975212No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4980.10661551405590677No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4810.10297602863632764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)