FastQCFastQC Report
Wed 8 May 2024
EGAF00007963392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487028
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14930.3065532166528413No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12750.2617919298274432No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12130.2490616555926969No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT10060.2065589658089473No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7700.15810179291539705No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6200.12730274234746258No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT5950.12216956725280682No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5730.11765237316950976No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.11436714110893008No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5530.11354583309378516No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5480.11251919807485401No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4980.10225284788554251No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4950.10163686687418383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)