FastQCFastQC Report
Wed 8 May 2024
EGAF00007963393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487028
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32600.6693660323431097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12950.2658984699031678No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG10560.21682531599825883No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7860.16138702497597673No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6430.13202526343454585No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6160.12648143433231765No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6020.12360685627931044No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.12216956725280682No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5880.12073227822630321No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5880.12073227822630321No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5770.11847368118465468No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5340.1096446200218468No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4990.10245817488932875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)