FastQCFastQC Report
Wed 8 May 2024
EGAF00007963395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466466
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31820.6821504675581929No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22640.48535155831293164No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11670.2501790055438124No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG10440.2238105242397088No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7750.16614287000553093No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5470.11726470953938765No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5350.11469217477801169No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5350.11469217477801169No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5340.11447779688123036No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5150.11040461684238509No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5040.10804645997779046No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4920.1054739252164145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)