FastQCFastQC Report
Wed 8 May 2024
EGAF00007963396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494619
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16550.3346009757004887No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14270.2885048896221132No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11830.2391739904856061No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10630.21491289254961898No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9500.1920670253265645No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8680.17548860840363997No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7750.15668625750324996No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7140.1443535327191232No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6950.1405121922125919No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6740.13626650007379418No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6680.1350534451769948No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6580.13303168701566256No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6190.12514683018646675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)