FastQCFastQC Report
Wed 8 May 2024
EGAF00007963397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494619
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16770.3390488436554196No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16650.33662273386182096No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15500.31337251500649993No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13650.27596998902185316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12260.2478675505793348No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10100.204197574294558No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10000.20217581613322577No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7850.15870801566458226No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7580.15324926862898514No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6980.1411187196609916No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6930.14010784058032547No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6900.1395013131319258No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6270.12676423671553258No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6080.12292289620900126No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5730.11584674264433836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)