FastQCFastQC Report
Wed 8 May 2024
EGAF00007963398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475297
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16600.3492553077339011No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14360.302126880666194No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11350.23879805679396252No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10110.2127091060957675No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9350.19671910405493828No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7570.1592688361172067No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7330.1542193617885238No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6880.14475159742224336No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6670.1403333073846458No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6500.13675659640182874No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6450.13570462258335317No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5780.12160817341578002No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5590.11761067290557274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)