FastQCFastQC Report
Wed 8 May 2024
EGAF00007963399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475297
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23830.5013707218854737No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16740.35220083442563277No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16060.3378939904943646No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15590.32800543660069387No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12850.2703572713482307No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11390.239639635848743No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9520.20029581503775534No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8690.1828330496510603No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7470.1571648884802555No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6880.14475159742224336No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6490.13654620163813364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6410.13486304352857267No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6030.12686804250815806No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.12266014723425563No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5130.10793251377559715No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4920.10351422373799961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)