FastQCFastQC Report
Wed 8 May 2024
EGAF00007963401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496389
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17050.34348061701609023No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16370.32978168331691476No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15990.32212639683796374No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13930.2806266859257558No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12970.2612870148210375No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9850.19843308373070312No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9070.18271960095811954No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7530.15169554522763398No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7520.15149409032029315No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6690.13477333301100547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6600.13296023884493816No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6590.13275878393759732No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6230.12550640727332796No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5750.11583657172096883No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5270.1061667361686097No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.10415218709520155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)