FastQCFastQC Report
Wed 8 May 2024
EGAF00007963402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477000
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16260.34088050314465407No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14110.29580712788259955No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11970.2509433962264151No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10770.22578616352201258No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9250.19392033542976939No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7730.1620545073375262No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6980.14633123689727462No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6580.1379454926624738No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6450.13522012578616352No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6420.13459119496855346No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6190.12976939203354299No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6080.12746331236897274No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6040.12662473794549264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)