FastQCFastQC Report
Wed 8 May 2024
EGAF00007963403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477000
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24120.5056603773584906No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16500.3459119496855346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16440.34465408805031444No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15210.31886792452830187No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13490.2828092243186583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.25953878406708597No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9780.20503144654088049No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8880.18616352201257863No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7180.15052410901467506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6620.13878406708595387No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6530.13689727463312368No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6430.1348008385744235No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.13144654088050314No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6120.12830188679245283No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5280.11069182389937106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)