FastQCFastQC Report
Wed 8 May 2024
EGAF00007963405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464285
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26460.5699085690901062No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21610.4654468699182614No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10570.227661888710598No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9340.20116954026083117No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9200.19815415100638617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7130.15356946702994928No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6830.1471079186275671No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6740.14516945410685247No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6240.13440020676954886No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6010.12944635299438922No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5770.12427711427248349No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5680.12233864975176884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4880.10510785401208309No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4720.10166169486414593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)