FastQCFastQC Report
Wed 8 May 2024
EGAF00007963407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448569
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25260.5631240678691573No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23190.5169773212147964No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21400.47707264657165344No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10690.23831339214256891No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9320.20777182551625278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9180.20465078951064386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7320.16318559686469641No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6320.1408924825389182No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6280.14000075796588707No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5700.1270707516569357No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5510.12283505993503786No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.11525540106427329No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4570.10187953246880636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)