FastQCFastQC Report
Wed 8 May 2024
EGAF00007963408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468200
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11710.2501067919692439No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10850.2317385732592909No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9910.21166168304143526No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9810.20952584365655702No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9150.19542930371636053No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7000.149508756941478No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6230.13306279367791543No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5900.12601452370781718No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5690.12152926099957284No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5600.11960700555318239No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5370.11469457496796241No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4910.10486971379752243No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4770.10187953865869286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)