FastQCFastQC Report
Wed 8 May 2024
EGAF00007963409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468200
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25710.5491243058522No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22440.47928235796668095No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10400.22212729602733874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9110.19457496796240922No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8270.17663391712943186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7330.15655702691157625No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6580.14053823152498932No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6420.1371208885091841No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6010.12836394703118326No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5950.12708244340025632No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5820.12430585219991458No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5730.12238359675352413No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5190.11085006407518154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5030.10743272105937633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)