FastQCFastQC Report
Wed 8 May 2024
EGAF00007963411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450992
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26250.5820502359243622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23280.5161954092312059No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20970.46497498846986196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10520.23326356121616348No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8940.1982296803490971No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8640.19157767765281866No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.16341753290524No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6500.14412672508603258No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6280.1392485897754284No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6250.13858338950580054No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5720.12683151807570864No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5340.118405647993756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)