FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007963421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465526
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7560.16239694453156214No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7500.16110807989242276No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7220.15509337824310565No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6250.13425673324368562No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5910.12695316695522915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)