FastQCFastQC Report
Wed 8 May 2024
EGAF00007963422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447874
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6710.1498189222861787No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6450.14401371814394226No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6320.14111111607282403No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6190.13820851400170583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)