FastQCFastQC Report
Wed 8 May 2024
EGAF00007963423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447874
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23170.5173329999062236No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6880.15361463268687175No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6670.14892581395660387No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6600.1473628743798479No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6510.14535338063830452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)