FastQCFastQC Report
Wed 8 May 2024
EGAF00007963427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450121
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23990.5329678019910202No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7460.16573321395802462No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7050.15662455206488923No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6960.1546250896981034No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5880.13063154129667356No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4840.10752664283603741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)