FastQCFastQC Report
Wed 8 May 2024
EGAF00007963428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455227
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12960.28469313111919986No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11660.2561359497569345No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10520.23109349840848634No Hit
ACCGCCCAGACAAGCCAGAGCCACCAGGTGATCGTTGGTCAGTG9780.21483787209458138No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7860.17266111192877398No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7790.17112341754772895No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7730.16980539379254747No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7470.16409395752009437No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7460.1638742868942308No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7320.16079889813214066No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6020.13224171676987526No Hit
CAGGCAAGCCAGAGCTACCAGGTGGTCGTTGGTCAGTGCGGCCA5770.12674995112328574No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4610.10126815852311045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)