FastQCFastQC Report
Wed 8 May 2024
EGAF00007963429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455227
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12980.28513247237092704No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11890.2611883741517968No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10480.23021481590503198No Hit
TGCCAGGCACACGGCCTGACCCCACAGCAGG10350.22735909776880545No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8650.19001509137199685No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8460.1858413494805888No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7960.1748578181874098No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7660.16826769941150238No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7630.16760868753391164No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC7210.1583825212476413No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.15245141434932463No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.15135306122000672No Hit
CCGGTGCTGTGTCAGGACCACGGTCTGACCC5920.13004501051123946No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.12718929237501292No Hit
GCCTACTCTGGCTCCCCAGTTTCTGCACCGT4750.10434354728520057No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4660.10236651165242835No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4630.1017074997748376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)