FastQCFastQC Report
Wed 8 May 2024
EGAF00007963430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438280
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12510.2854339691521402No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11970.27311307839737153No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9830.22428584466551066No Hit
ACCGCCCAGACAAGCCAGAGCCACCAGGTGATCGTTGGTCAGTG9490.21652824678287855No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7760.1770557634388975No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7660.17477411700282924No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7480.17066715341790636No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7290.16633202518937665No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7260.16564753125855616No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6740.15378296979100117No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6000.136898786164096No Hit
CAGGCAAGCCAGAGCTACCAGGTGGTCGTTGGTCAGTGCGGCCA5000.11408232180341335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)