FastQCFastQC Report
Wed 8 May 2024
EGAF00007963431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438280
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21550.49169480697271145No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12520.285662133795747No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12110.2763073834078671No Hit
TGCCAGGCACACGGCCTGACCCCACAGCAGG9900.2258829971707584No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9730.22200419822944237No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8320.18983298348087982No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8000.18253171488546135No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7640.1743177877156156No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7640.1743177877156156No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7120.1624532262480606No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.1572054394451036No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6770.15446746372182166No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6180.1410057497490189No Hit
CCGGTGCTGTGTCAGGACCACGGTCTGACCC5220.11910194396276352No Hit
GCCTACTCTGGCTCCCCAGTTTCTGCACCGT4590.10472757141553346No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4450.10153326640503788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)