FastQCFastQC Report
Wed 8 May 2024
EGAF00007963432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455790
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13700.3005770201189144No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11500.2523091774720814No Hit
ACCGCCCAGACAAGCCAGAGCCACCAGGTGATCGTTGGTCAGTG9740.21369490335461505No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9740.21369490335461505No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7890.1731060356743237No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7740.16981504640294873No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7700.1689374492639154No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7610.16696285570109043No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7430.16301366857544045No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6890.15116610719849052No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6110.13405296298734068No Hit
CAGGCAAGCCAGAGCTACCAGGTGGTCGTTGGTCAGTGCGGCCA5280.11584282235239914No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4630.10158186884310758No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4600.10092367098883258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)