FastQCFastQC Report
Wed 8 May 2024
EGAF00007963433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455790
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13950.30606200223787267No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11330.2485793896311898No Hit
TGCCAGGCACACGGCCTGACCCCACAGCAGG10030.22005748261260666No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9660.2119397090765484No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8510.18670879132934026No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8350.18319840277320695No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8330.1827596042036903No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7720.16937624783343205No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7310.16038087715834046No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7270.15950328001930714No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC7140.15665108931744884No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7110.15599289146317383No Hit
CCGGTGCTGTGTCAGGACCACGGTCTGACCC5400.11847561376949911No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5390.11825621448474077No Hit
GCCTACTCTGGCTCCCCAGTTTCTGCACCGT4780.10487285811448255No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4700.10311766383641591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)