FastQCFastQC Report
Wed 8 May 2024
EGAF00007963434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448599
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24180.5390114556653046No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18680.4164075265437507No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18340.4088283745616909No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17320.38609091861551187No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16340.3642451276083986No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15340.3419535041317524No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13830.3082931526820167No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12770.28466403179677174No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11470.2556849212771317No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10250.22848914063562337No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10080.22469956464459348No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9240.2059746009242107No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8230.18346006121279806No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7790.17365174688307375No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG7750.1727600819440079No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7560.1685246734834451No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7170.15983094032755313No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7110.15849344291895434No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6630.1477934636501642No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6450.14378097142436788No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6410.14288930648530201No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6310.1406601441376374No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6160.13731640061614048No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT6070.13531015450324232No Hit
AGACGCTTTGTCGTTGCGCCAGCCTGCACCGGTCCACAGCTGCA6030.13441848956417649No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5740.12795391875594908No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5520.12304976159108691No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5520.12304976159108691No Hit
GATACGGTCAGCCACGCGGGCATCAGAGCCTTTACCGCATTCCA5220.11636227454809307No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5090.11346436349612907No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4990.11123520114846444No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG4760.10610812774883582No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG4620.10298730046210534No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4560.10164980305350658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)