FastQCFastQC Report
Wed 8 May 2024
EGAF00007963436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431151
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22290.5169882477368718No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17460.4049625305287474No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17390.40333896940978914No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17150.3977724741447892No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16240.376666179598331No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14560.33770071274333124No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12850.2980394339802065No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12840.2978074966774982No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10770.24979647501687346No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10040.2328650519191652No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9330.21639750342687367No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8410.1950592715777071No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7560.1753446008474989No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7440.1725613532149989No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7360.17070585479333225No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6920.16050061347416567No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6910.16026867617145732No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6850.15887705235520735No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6720.15586186741999902No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG6450.14959956024687407No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6270.1454246887981241No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6220.14426500228458244No Hit
AGACGCTTTGTCGTTGCGCCAGCCTGCACCGGTCCACAGCTGCA6110.1417136919547908No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5620.13034876412208252No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT5590.12965295221395753No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5240.1215351466191659No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5130.11898383628937426No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4910.11388121562979096No Hit
GATACGGTCAGCCACGCGGGCATCAGAGCCTTTACCGCATTCCA4800.1113299052999993No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG4760.11040215608916597No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4640.10761890845666598No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4620.10715503385124933No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG4550.10553147273229102No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4380.10158853858624936No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4340.10066078937541603No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4340.10066078937541603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)