FastQCFastQC Report
Wed 8 May 2024
EGAF00007963437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431151
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38740.8985251106920777No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29720.6893176636491624No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21450.4975055143093719No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18500.429084010010414No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18200.4221258909291641No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16730.38803110743103925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16570.38432011058770593No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16410.3806091137443726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14120.32749547142416463No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13970.3240164118835397No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13700.3177541047104147No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10870.25211584804395676No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9690.2247472463243736No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8700.20178545335624876No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8130.18856502710187384No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7320.16977810558249895No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7170.16629904604187395No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC6860.15910898965791567No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6750.156557679328124No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6320.14658437531166574No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6310.14635243800895742No Hit
CTGCCGACCTTCTCCAACATTGGTGTAGGCC6150.1426414411656241No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG5740.1331320117545825No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5720.13266813714916584No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5380.12478226885708256No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5040.11689640056499927No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5040.11689640056499927No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4990.11573671405145762No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4980.11550477674874927No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG4960.11504090214333261No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4810.11156184260270763No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4760.11040215608916597No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC4700.10901053227291599No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4660.10808278306208266No Hit
TCCCCGAAACCGTCTTGTCACGACGTTATCA4620.10715503385124933No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4550.10553147273229102No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4470.10367597431062436No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4440.10298016240249935No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4390.1018204758889577No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4370.10135660128354103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)