FastQCFastQC Report
Wed 8 May 2024
EGAF00007963438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450485
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23420.5198841248876211No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18920.41999178662996545No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18340.40711677414342323No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17660.3920219319178219No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17650.391799948943916No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15690.34829128605835935No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13410.2976791680078138No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13350.2963472701643784No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10980.24373730534867974No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10940.24284937345305618No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10160.22553470148839583No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8950.19867476164578177No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7860.1744786174900385No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7850.1742566345161326No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7560.16781912827286147No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7150.1587178263427195No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG7140.15849584336881362No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7090.15738592849928412No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7060.1567199795775664No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6960.1545001498385074No Hit
AGACGCTTTGTCGTTGCGCCAGCCTGCACCGGTCCACAGCTGCA6690.14850660954304806No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6590.14628677980398902No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6550.14539884790836544No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT6230.13829539274337657No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5860.13008202270885824No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5690.1263083121524579No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5490.12186865267433987No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5410.12009278888309267No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5240.11631907832669235No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG5230.11609709535278644No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG5020.11143545290076251No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4930.1094376061356094No Hit
GATACGGTCAGCCACGCGGGCATCAGAGCCTTTACCGCATTCCA4850.1076617423443622No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4800.10655182747483269No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4710.10455398070967957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)