FastQCFastQC Report
Wed 8 May 2024
EGAF00007963439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450485
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA40920.9083543292229487No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31850.7070157718902961No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20350.4517353518985094No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19380.43020300342963697No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18270.40556289332608186No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18180.4035650465609288No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17700.3929098638134455No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14790.3283128184068282No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14710.326536954615581No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14400.31965548242449804No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12360.27437095574769416No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10850.24085152668790305No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9250.2053342508629588No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7880.17492258343785033No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7540.16737516232504965No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC7470.16582128150770836No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7460.16559929853380245No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7120.1580518774210018No Hit
CTGCCGACCTTCTCCAACATTGGTGTAGGCC6730.14939454143867165No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6600.14650876277789493No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6320.14029323950852968No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG6280.1394053076129061No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6060.13452168218697624No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5840.12963805676104642No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5730.12719624404808152No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5690.1263083121524579No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5640.12519839728292842No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG5400.11987080590918676No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5220.11587511237888054No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5190.11520916345716284No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC5160.11454321453544514No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5090.11298933371810382No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5010.11121346992685661No Hit
TCCCCGAAACCGTCTTGTCACGACGTTATCA4950.1098815720834212No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4900.1087716572138917No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4890.1085496742399858No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4880.1083276912660799No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4600.10211216799671465No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4570.10144621907499694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)