FastQCFastQC Report
Wed 8 May 2024
EGAF00007963440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433780
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22850.5267647194430357No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18390.42394762321914337No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17950.41380423256028404No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16970.3912121351837337No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16770.38660150306607033No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14230.328046475171746No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13030.30038268246576605No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12020.27709899027156626No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10970.25289317165383374No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10840.24989626077735258No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9420.21716077274194293No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8180.1885748536124303No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7670.17681774171238876No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7670.17681774171238876No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7470.17220710959472543No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7110.16390797178293143No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7100.16367744017704827No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7040.16229425054174929No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6760.1558393655770206No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG6700.1544561759417216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6690.15422564433583844No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6160.14200746922403062No Hit
AGACGCTTTGTCGTTGCGCCAGCCTGCACCGGTCCACAGCTGCA5840.1346304578357693No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT5600.1290976992945733No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5510.12702291484162478No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5340.12310387754161096No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5260.12125962469454563No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5180.1194153718474803No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5030.11595739775923279No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4830.11134676564156945No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4750.10950251279450413No Hit
GATACGGTCAGCCACGCGGGCATCAGAGCCTTTACCGCATTCCA4490.1035086910415418No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG4480.10327815943565863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)