FastQCFastQC Report
Wed 8 May 2024
EGAF00007963441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433780
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39150.9025312370325972No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30500.7031213979436581No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21280.49057125731937845No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19090.440084835630965No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19070.43962377241919864No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18060.4163400802249988No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16850.38844575591313574No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16510.380607681313108No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14580.3361150813776569No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13920.3208999953893679No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12790.2948499239245701No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11970.2759463322421504No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10170.2344506431831804No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8560.1973350546359906No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7420.1710544515653096No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7340.16921019871824428No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7300.1682880722947116No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC7130.1643690349946978No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6780.15630042878878694No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6630.15284245470053942No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6050.13947162155931578No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5840.1346304578357693No Hit
CTGCCGACCTTCTCCAACATTGGTGTAGGCC5820.13416939462400296No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG5760.13278620498870394No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5750.1325556733828208No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5600.1290976992945733No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5410.12471759878279311No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5030.11595739775923279No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5020.11572686615334964No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4960.11434367651805062No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4930.11365208170040113No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4890.11272995527686845No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4780.11019410761215363No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4630.10673613352390612No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG4620.10650560191802297No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC4520.1042002858591913No Hit
TCCCCGAAACCGTCTTGTCACGACGTTATCA4490.1035086910415418No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4400.10143390658859329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)