FastQCFastQC Report
Wed 8 May 2024
EGAF00007963443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440362
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT64341.4610706645895877No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30230.6864806681775448No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19920.45235510784309274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19400.44054664117248993No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19250.43714035270981605No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18200.4132963334710988No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15460.35107479755292237No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14560.33063706677687904No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12510.28408445778700253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12370.28090525522184023No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9940.22572338212652315No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8400.1907521539097379No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8230.18689169365204084No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6930.15737052697553378No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6850.15555383979544102No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6430.14601623209995412No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6370.14465371671488456No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6150.13965782696962953No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5310.12058261157865573No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5240.11899301029607459No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5210.11831175260353982No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4670.1060491141379138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)