FastQCFastQC Report
Wed 8 May 2024
EGAF00007963445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422583
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61401.4529690025391462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29020.6867289976170362No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22010.5208444258287721No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18640.44109677862100466No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18290.43281438202672606No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17990.4257151849459159No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15680.3710513674236777No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15400.3644254501482549No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13900.3289294647442041No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11960.28302132362163174No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10900.2579374939361025No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9920.23474678347212263No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7950.18812872264146924No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7890.18670888322530724No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6600.15618233577782353No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6400.1514495377239501No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5920.14009082239465384No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5890.13938090268657283No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.13512138443808672No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5010.11855659124952968No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4880.11548027251451194No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4290.10151851825558529No Hit

[OK]Adapter Content

Adapter graph