FastQCFastQC Report
Wed 8 May 2024
EGAF00007963449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425064
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62251.4644853480887585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28220.6639000244669039No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21650.5093350648372951No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19020.4474620292473604No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18250.4293471100822464No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18120.42628874710631814No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17580.41358477782169273No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14770.3474770858035496No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14390.3385372555662206No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12100.2846630154517908No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10980.2583140421207159No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9520.2239662733141362No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7960.18726591760299627No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7890.1856191067698041No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6830.16068168558146537No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6800.1599759095100973No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6430.15127133796322437No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5420.1275102102271658No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.12609865808442963No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5060.11904089737074888No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4930.11598253439482054No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4750.11174787796661208No Hit

[OK]Adapter Content

Adapter graph