FastQCFastQC Report
Wed 8 May 2024
EGAF00007963453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483097
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65061.3467274688106114No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23320.4827187914642401No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17000.3518962030399692No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13140.2719950651732468No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12290.2544002550212483No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11510.23825442923470858No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10530.2179686481182868No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9020.18671198537767777No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8770.1815370412153253No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7970.16497721989579733No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7600.15731830253551565No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7380.15276435167264546No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG6720.13910249908403488No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6670.13806751025156438No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6410.1326855683227178No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6340.1312365839572591No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6190.1281316174598476No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5680.11757473136864854No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5540.11467676263773115No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5430.11239978720629605No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5400.11177879390681374No Hit
CCGAACGGTGGTACCCTGACTAACCTGCTGG5380.11136479837382555No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5220.10805283410991995No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5200.10763883857693175No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4990.10329188548055566No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4850.10039391674963828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)