FastQCFastQC Report
Wed 8 May 2024
EGAF00007963455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503466
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68271.3560002065680703No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17140.3404400694386513No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13720.2725109540664116No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12460.24748443787663915No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12100.24033400467956129No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11530.22901248545085465No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8980.17836358363821986No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8940.17756909106076676No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8220.16326822466661106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8090.16068612378988847No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7600.15095358971608808No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG7020.13943344734301819No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6900.1370499696106589No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6830.13565960760011597No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6570.13049540584667088No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6280.12473533466013595No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5830.11579729316378862No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5700.11321519228706606No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5630.11182483027652314No Hit
CCGAACGGTGGTACCCTGACTAACCTGCTGG5590.11103033769907003No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.1098385988328904No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5480.10884548311107403No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5430.10785236738925766No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5420.10765374424489438No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5240.10407852764635546No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5240.10407852764635546No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5180.10288678878017582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)