FastQCFastQC Report
Wed 8 May 2024
EGAF00007963457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485796
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68181.4034697692035338No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24240.4989748783439963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17310.35632240693624484No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12790.26327923655196833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12270.2525751550033347No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11460.23590148951411705No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10810.22252138757832507No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9110.1875272748231768No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8530.17558810694200858No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8020.1650898731154641No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7630.1570618119539889No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7080.14574018723908802No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG6890.14182908051939497No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6320.13009576036031584No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6260.1288606740277812No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6050.12453787186390995No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5890.12124430831048423No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.12000922197794958No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5720.1177448970349694No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5710.11753904931288031No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5480.11280455170483084No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5470.11259870398274173No Hit
CCGAACGGTGGTACCCTGACTAACCTGCTGG5450.1121870085385635No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5300.1090992927072269No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5240.10786420637469225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)