FastQCFastQC Report
Wed 8 May 2024
EGAF00007963459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465830
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15270.3278019878496447No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11790.253096623231651No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6180.13266642337333362No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5970.12815834102569607No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5940.12751432926174786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)